_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-41
 Query name: gi|835868918|ref|XP_012777272.1| PREDICTED: glutathione peroxidase 2 [Maylandia zebra] >gi|923840712|ref|XP_013768723.1| PREDICTED: glutathione peroxidase 2 [Pundamilia nyererei]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/124314668/tempfiles/temptarget.fasta
 Chromosome: OMLM01020689.1:subseq_0,91983_ Strand: -
 Positions:
 -Exon 1  41762        41983
 -Exon 2  40812        41162

 Redox box: no

Query   MTFIAKTFYDLRATTLEGDSVDFNVFRGRVVLIENVASLUGTTTRDFSELNQLQSKYPHRLVVLGFPCNQFGYQ <---Intron---> ENCTNGEILN
        |||||||||||/|||||||/|||||||||||||||||||||||||||||||||||||||||||||||||||||| <   599bp    > |||/|||||/
Target  MTFIAKTFYDLKATTLEGDTVDFNVFRGRVVLIENVASLUGTTTRDFSELNQLQSKYPHRLVVLGFPCNQFGYQ                ENCSNGEILS
        aatagaattgtagaacgggaggtagtagcggcagaggtctgaaacgtagcacccaatccccggcgtctactgtc                gattaggaca
        tcttcactaataccctagactatattgggttttaatcctggcccgatgataatagaacagttttgtcgaatgaa                aagcagattg
        ggcccgtcttggccgggacggcccacgatgccagtgcgcacctagcccgccgtgcgcttgggcgttctcgtatg                gccctagcgt
                                               *                                                            

Query   SLQHVRPGGGFKPIFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPNSLIQDPKFLVWSPISRTDISWNFEKFLIGPEGEPFKRYSKKFPTIDIEPDIQR
        |||||||||||/| |||/|||||||||||||||||||||||||||||||/||||||||||| |/|||||||||||||||||||||||/||||||||||||
Target  SLQHVRPGGGFQPNFTIYEKCDVNGTNTHPVFAYLKDKLPYPDDDPNSLMQDPKFLVWSPICRSDISWNFEKFLIGPEGEPFKRYSKRFPTIDIEPDIQR
        tcccgccgggtccataatgatggagaaaccgtgtcagacctcgggcatcacgcatcgtacatctgattatgatcagcgggctaataaatcaagagcgaca
        ctaatgcgggtacatctaaagatagcacacttcataaatcacaaacacttaacatttggctggcatcgataatttgcagactagagagtcctatacatag
        aggtgtatcatgccccctggttataacacactctgacgtctttttccctggccatgtgtcccgccctgctgacctgtgagccaaccagccctccgtctaa
                                                                                                            

Query   LLRLTKT
        |||||||
Target  LLRLTKT
        ccataaa
        ttgtcac
        gaaacgt
               
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 64 ; UGA-SECIS: 517

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01020689.1:subseq_0,91983_ Strand = - Positions = 40747 - 40680
 Found by:  Infernal (score=19.27) Covels (score=16.71)
 Stem2 length = 11   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -16.2

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....(((((---....([[((((((((((((.........-----..))))))))))))]])..--..-.)))))....
 target  AAGCCUUAU---UAAAUGAGGGUGAUAUUCUGAAAAGCUU-----AGGGAGUAUCAUCUGAGGC--CU-UGUAAGUGCU
                         ****            ^^^                       ****